Research Interests:

  • Modeling and Simulation  

  • Complex System

  • High Performance Computing

  • Bioinformatics


Publications:
[1]
Yu, N., Yu, Z., Li, B., Gu, F., and Pan, Y. A comprehensive review of emerging computational methods for gene identification. Journal of Information Processing Systems, 21 (1): 1-34, 2016.
[2] Wu, S., Zhang, P., Li, F., Gu, F., and Pan, Y. A hybrid discrete particle swarm optimization-genetic algorithm for multi-task scheduling problem in service oriented manufacturing systems. Journal of Central South University, 23(2): 421-429, 2016.

[3] Bai, F., Gu, F., Hu, X., and Guo, S. Particle routing in distributed particle filters for large-scale spatial temporal systems. IEEE Transactions on Parallel and Distributed Systems, 27(2): 483-491, 2016
.
[4] Gu, F., and Wang, X. Analysis of allele specific expression -- A Survey. Tsinghua Science and Technology, 20(5): 513-529, 2015.
[5] Gu, F., Butt, M., Ai, C., Shen, X., and Xiao, J. Adaptive particle filtering in data assimilation of wildfire spread simulation, 2015 Summer Simulation Multi-Conference, 159-168, 2015.
[6] Yu, N., Guo, X., and Gu, F., and Pan, Y. DNA AS X: An information-coding-based model to improve the sensitivity in comparative gene analysis, 11th International Symposium on Bioinformatics Research and Applications, 366-377, 2015.
[7] Yu, N., Gu, F., Guo, X., and He, Z. A fine-grained flow control model for cloud-assisted data broadcasting, CNS 2015, 2015 Spring Simulation Multi-Conference, 324-331, 2015.
[8] Gu, F. Adaptively perturbing localized state space in data assimilation of wildfire spread simulation. ANSS 2015, 2015 Spring Simulation Multi-Conference, 254-263, 2015. (Runner-up of the best paper award for ANSS 2015)

[9] Ai, C., Zhong, W., Yan, M., and Gu, F. A partner-matching framework for social activity communities. Computational Social Networks, 1:5, 2014.

[10]
Guo, X., Yu, N., Gu, F., Ding, X., Wang, J., and Pan, Y. Genome-wide interaction-based association of human Diseases-a survey. Tsinghua Science and Technology, Tsinghua Science and Technology, 9(16), 596-616, 2014.
[11] Ai, C., Zhong, W., Yan, M., and Gu, F. Partner matching applications of social networks. COCOON 2014: 647-656, 2014.
[12] Zheng, X., and Gu, F. Fast Fourier transform on FCC and BCC lattices with outputs on FCC and BCC lattices respectively, Journal of Mathematical Imaging and Vision, 49(3): 530-550, 2014.
[13] Yan, X., Gu, F., Hu, X., and Pan, Y. Dynamic formation control for autonomous underwater vehicles, Journal of Central South University, 2014(21):113-123, 2014.
[14]
Yan, X., Gu, F., Hu, X., and Engstrom, C. Dynamic data driven event reconstruction for traffic system using sequential Monte Carlo methods, 2013 Winter Simulation Conference, 2042-2053, 2013.
[15] Xue, H., Gu, F., Hu, X. Data assimilation using sequential Monte Carlo methods in wildfire spread simulation, ACM Transaction on Modeling and Computer Simulation, 22(4):23:1-25, 2012.
[16]
Gu, F., Hu, X. Analysis and quantification of data assimilation based on sequential Monte Carlo methods for wildfire spread simulation, International Journal of Modeling, Simulation, and Scientific Computing, 4, 445-468, 2010.
[17] Yan, X., Gu, F., Hu, X., Guo, S. A dynamic data driven application system for wildfire spread simulation, Proc. 2009 Winter Simulation Conference (WSC'09), 2009.
[18]
Yan, X., Chen, B., Qian, H., Gu, F., Hu, X. A handover scheme for subnet mobility in heterogeneous networks. World Conference on Engineering, 2009.
[19] Gu, F., Yan, X., Hu, X. State estimation using particle filters in wildfire spread simulation. Proc. 42nd Annual Simulation Symposium (ANSS), 2009 .
[20] Gu, F., Hu, X. Towards applications of particle filter in wildfire spread simulation. Proc. 2008 Winter Simulation Conference (WSC'08), 2008.
[21]
Gu, F., Hu, X., Ntaimo, L. Towards validation of DEVS-FIRE wildfire simulation model. Proc. High Performance Computing and Simulation Symposium (HPCS08), part of SpringSim'08, 2008.
[22]
Liu, C., Xie, T., Bi, H., and Gu, F. Analysis of MBO in Chinese corporations. Journals  of Beijing Institute of Machinery, 17(3): 83-87, 2002.
[23]
Gu, F., Lu, T. The study and implementation of web-based office automation. Journals  of Beijing Institute of Machinery, 17(3): 40-45, 2002.
External Grants:
[1] Integrating NSF/IEEE-TCPP Curriculum Initiative on PDC to Software Engineering Course System at Beijing Normal University Zhuhai, NSF/IEEE, co-PI, $2,000, 2014-2015.
[2]
Integrating NSF/TCPP Curriculum Initiative on PDC into Undergraduate Courses at Guangdong University of Petrochemical Technology, NSF/IEEE, co-PI, $2,000, 2014-2015.
[3] Enhance Parallel and Distributed Computing Teaching by Infusing NSF/IEEE-TCPP Curriculum Initiative into the Existing Courses and Developing a New Course, NSF/IEEE, co-PI, $2,500, 2014-2015.
[4] Research Initiation Award: Spatial-temporal Information Fusion and Real-time Sensor Data Assimilation Using Sequential Monte Carlo Methods, NSF, PI, $199,884, 2013-2015.
[5] Experimentally Guided In-silico Analysis of Cellular Aggregate Fusion in Bioprinting, Grants for Exploratory Academic Research, South Carolina EPSCoR/IDeA, co-PI, $100,000, 2013-2014.
[6]
Modeling and Simulation of Fusion and Phase Evolution in Biofabrication Processes, Grants for Exploratory Academic Research, South Carolina EPSCoR/IDeA, co-PI, $85,000, 2011-2012.

Professional Activities:

Peer Reviewer for the following journals and conferences

1. IEEE INFOCOM 2015

2. IEEE/ACM Transactions on Computational Biology and Bioinformatics

3. IEEE INFOCOM 2014

4. ACM Transaction on Modeling and Computer Simulation

5. Symposium on Theory of Modeling and Simulation (TMS/DEVS) 2013

6. Intelligent Agent Technology 2013

7. 26th ACM/IEEE/SCS Workshop on Principles of Advanced and Distributed Simulation (PADS 2012)

8. 9th International Conference on Modeling, Optimization and SIMulation (MOSIM 2012)

9. International Journal of Agent Technologies and Systems

10. Simulation: Transactions of the Society for Modeling and Simulation International

11. International Journal of Modeling, Simulation, and Scientific Computing

12. International Journal of Knowledge and Systems Science

13. Agent-Directed Simulation Symposium 2011 (ADS 2011)

14. Huntsville Simulation Conference 2010

 

Member of Scientific Working Group Board of SC EPSCoR/IDeA

Technical Program Committee and Session Chair

1. Winter Simulation Conference 2015 (WSC 2015), TPC

2. The 36 IEEE Sarnoff Symposium 2015, Demos/Exhibits co-chair

3. 3rd International IMB Cloud Academy Conference 2015 (ICACON 2015), TPC

4. 5th International Conference on Simulation and Modeling Methodologies, Technologies and Applications (SIMULTECH 2015), TPC

5. Symposium on Theory of Modeling and Simulation 2015 (TMS/DEVS 2015), TPC and session chair

6. 4th International Conference on Simulation and Modeling Methodologies, Technologies and Applications (SIMULTECH 2014), TPC

7. Winter Simulation Conference 2014 (WSC 2014), TPC

8. ACM Southeast Conference 2014 (ACMSE 2014), TPC and session chair


Presentations:
[1] A fine-grained flow control model for cloud-assisted data broadcasting, 2015 Spring Simulation Multi-Conference, Alexandria, VA, April 12-15, 2015.

[2]
Adaptively perturbing localized state space in data assimilation of wildfire spread simulation, 2015 Spring Simulation Multi-Conference, Alexandria, VA, April 12-15, 2015.
[3]
Dynamic data driven application system for wildfire spread simulation, Beijing Normal University Zhuhai, Zhuhai, China, June 2014.
[4] Dynamic data driven application system for wildfire spread simulation, Civil Aviation University of China, Tianjin, China, June 2014.
[5] Dynamic data driven application system for wildfire spread simulation, Tianjin University, Tianjin, China, December 2013.
[6]
Dynamic data driven event reconstruction for traffic system using sequential Monte Carlo methods, 2013 Winter Simulation Conference (WSC'13), Washington, D.C., December 8-11, 2013.
[7]
Dynamic data driven application system for wildfire spread simulation, Jiangsu Normal University, Xuzhou, Jiangsu, China, December 2012.
[8] A dynamic data driven application system for wildfire spread simulation, 2009 Winter Simulation Conference (WSC'09), Austin, TX, December 13-26, 2009.
[9]
State estimation using particle filters in wildfire spread simulation, 42nd Annual Simulation Symposium (ANSS), San Diego, CA, March 22-27, 2009.
[10] Towards applications of particle filter in wildfire spread simulation, 2008 Winter Simulation Conference, Miami, FL, December 7-10, 2008.
[11] Towards validation of DEVS-FIRE wildfire simulation model, HPCS 2008, Ottawa, Canada, April 14-16, 2008.